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Recent Advancements in Genome Editing Technologies and Their Applications for Human Diseases

A special issue of International Journal of Molecular Sciences (ISSN 1422-0067). This special issue belongs to the section "Molecular Genetics and Genomics".

Deadline for manuscript submissions: closed (15 February 2024) | Viewed by 4488

Special Issue Editor

Department of Pediatrics, Indiana University School of Medicine, Indianapolis, IN 46202, USA
Interests: genome editing; muscular dystrophy; cardiovascular diseases

Special Issue Information

Dear Colleagues,

The aim of this Special Issue is to highlight recent advancements in genome editing technologies and their applications in the research and therapeutic development for Human diseases. The 2020 Nobel Prize in Chemistry was awarded to Drs. Charpentier and Doudna for their breakthrough discoveries in clustered regularly interspaced short palindromic repeats (CRISPR), a revolutionizing genome editing technology. Since its initial development for mammalian genome editing in early 2013, innovative applications of CRISPR/Cas9 in basic research and therapeutic developments have been expanding exponentially. Newer technologies based on CRISPR/Cas9, such as base editing and prime editing, are continuously emerging, which empower scientists to manipulate genetic codes like never before. These new advancements in genome editing technologies offer unprecedented opportunities to study the pathophysiological mechanisms and develop innovative therapeutic strategies for many diseases.

We invite contributions of original research papers and up-to-date review articles about genome editing technologies and their applications for human diseases at basic, pathogenic mechanisms, therapy, and molecular levels for a Special Issue with expert insights and perspectives on molecular advances in the field.

Dr. Renzhi Han
Guest Editor

Manuscript Submission Information

Manuscripts should be submitted online at www.mdpi.com by registering and logging in to this website. Once you are registered, click here to go to the submission form. Manuscripts can be submitted until the deadline. All submissions that pass pre-check are peer-reviewed. Accepted papers will be published continuously in the journal (as soon as accepted) and will be listed together on the special issue website. Research articles, review articles as well as short communications are invited. For planned papers, a title and short abstract (about 100 words) can be sent to the Editorial Office for announcement on this website.

Submitted manuscripts should not have been published previously, nor be under consideration for publication elsewhere (except conference proceedings papers). All manuscripts are thoroughly refereed through a single-blind peer-review process. A guide for authors and other relevant information for submission of manuscripts is available on the Instructions for Authors page. International Journal of Molecular Sciences is an international peer-reviewed open access semimonthly journal published by MDPI.

Please visit the Instructions for Authors page before submitting a manuscript. There is an Article Processing Charge (APC) for publication in this open access journal. For details about the APC please see here. Submitted papers should be well formatted and use good English. Authors may use MDPI's English editing service prior to publication or during author revisions.

Keywords

  • base editing
  • CRISPR
  • Cas9
  • genome editing
  • prime editing
  • gene
  • therapeutic development
  • pathophysiological mechanisms
  • therapeutic strategies

Published Papers (3 papers)

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Research

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13 pages, 2961 KiB  
Article
IGF-1 Genome-Edited Human MSCs Exhibit Robust Anti-Arthritogenicity in Collagen-Induced Arthritis
by Dong-Sik Chae, Seongho Han and Sung-Whan Kim
Int. J. Mol. Sci. 2024, 25(8), 4442; https://doi.org/10.3390/ijms25084442 - 18 Apr 2024
Viewed by 559
Abstract
Stem cell therapy stands out as a promising avenue for addressing arthritis treatment. However, its therapeutic efficacy requires further enhancement. In this study, we investigated the anti-arthritogenic potential of human amniotic mesenchymal stem cells (AMM) overexpressing insulin-like growth factor 1 (IGF-1) in a [...] Read more.
Stem cell therapy stands out as a promising avenue for addressing arthritis treatment. However, its therapeutic efficacy requires further enhancement. In this study, we investigated the anti-arthritogenic potential of human amniotic mesenchymal stem cells (AMM) overexpressing insulin-like growth factor 1 (IGF-1) in a collagen-induced mouse model. The IGF-1 gene was introduced into the genome of AMM through transcription activator-like effector nucleases (TALENs). We assessed the in vitro immunomodulatory properties and in vivo anti-arthritogenic effects of IGF-1-overexpressing AMM (AMM/I). Co-culture of AMM/I with interleukin (IL)-1β-treated synovial fibroblasts significantly suppressed NF-kB levels. Transplantation of AMM/I into mice with collagen-induced arthritis (CIA) led to significant attenuation of CIA progression. Furthermore, AMM/I administration resulted in the expansion of regulatory T-cell populations and suppression of T-helper-17 cell activation in CIA mice. In addition, AMM/I transplantation led to an increase in proteoglycan expression within cartilage and reduced infiltration by inflammatory cells and also levels of pro-inflammatory factors including cyclooxygenase-2 (COX-2), IL-1β, NF-kB, and tumor necrosis factor (TNF)-α. In conclusion, our findings suggest that IGF-1 gene-edited human AMM represent a novel alternative therapeutic strategy for the treatment of arthritis. Full article
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18 pages, 816 KiB  
Article
Polymorphic Variants of Genes Encoding Angiogenesis-Related Factors in Infertile Women with Recurrent Implantation Failure
by Aleksandra E. Mrozikiewicz, Grażyna Kurzawińska, Marcin Ożarowski, Michał Walczak, Katarzyna Ożegowska and Piotr Jędrzejczak
Int. J. Mol. Sci. 2023, 24(5), 4267; https://doi.org/10.3390/ijms24054267 - 21 Feb 2023
Cited by 2 | Viewed by 1762
Abstract
Recurrent implantation failure (RIF) is a global health issue affecting a significant number of infertile women who undergo in vitro fertilization (IVF) cycles. Extensive vasculogenesis and angiogenesis occur in both maternal and fetal placental tissues, and vascular endothelial growth factor (VEGF) and fibroblast [...] Read more.
Recurrent implantation failure (RIF) is a global health issue affecting a significant number of infertile women who undergo in vitro fertilization (IVF) cycles. Extensive vasculogenesis and angiogenesis occur in both maternal and fetal placental tissues, and vascular endothelial growth factor (VEGF) and fibroblast growth factor (FGF) family molecules and their receptors are potent angiogenic mediators in the placenta. Five single nucleotide polymorphisms (SNPs) in the genes encoding angiogenesis-related factors were selected and genotyped in 247 women who had undergone the ART procedure and 120 healthy controls. Genotyping was conducted by polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP). A variant of the kinase insertion domain receptor (KDR) gene (rs2071559) was associated with an increased risk of infertility after adjusting for age and BMI (OR = 0.64; 95% CI: 0.45–0.91, p = 0.013 in a log-additive model). Vascular endothelial growth factor A (VEGFA) rs699947 was associated with an increased risk of recurrent implantation failures under a dominant (OR = 2.34; 95% CI: 1.11–4.94, padj. = 0.022) and a log-additive model (OR = 0.65; 95% CI 0.43–0.99, padj. = 0.038). Variants of the KDR gene (rs1870377, rs2071559) in the whole group were in linkage equilibrium (D’ = 0.25, r2 = 0.025). Gene–gene interaction analysis showed the strongest interactions between the KDR gene SNPs rs2071559–rs1870377 (p = 0.004) and KDR rs1870377–VEGFA rs699947 (p = 0.030). Our study revealed that the KDR gene rs2071559 variant may be associated with infertility and rs699947 VEGFA with an increased risk of recurrent implantation failures in infertile ART treated Polish women. Full article
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Review

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25 pages, 1330 KiB  
Review
Applications of Genome Editing Technologies in CAD Research and Therapy with a Focus on Atherosclerosis
by Michelle C. E. Mak, Rijan Gurung and Roger S. Y. Foo
Int. J. Mol. Sci. 2023, 24(18), 14057; https://doi.org/10.3390/ijms241814057 - 13 Sep 2023
Cited by 1 | Viewed by 1573
Abstract
Cardiovascular diseases, particularly coronary artery disease (CAD), remain the leading cause of death worldwide in recent years, with myocardial infarction (MI) being the most common form of CAD. Atherosclerosis has been highlighted as one of the drivers of CAD, and much research has [...] Read more.
Cardiovascular diseases, particularly coronary artery disease (CAD), remain the leading cause of death worldwide in recent years, with myocardial infarction (MI) being the most common form of CAD. Atherosclerosis has been highlighted as one of the drivers of CAD, and much research has been carried out to understand and treat this disease. However, there remains much to be better understood and developed in treating this disease. Genome editing technologies have been widely used to establish models of disease as well as to treat various genetic disorders at their root. In this review, we aim to highlight the various ways genome editing technologies can be applied to establish models of atherosclerosis, as well as their therapeutic roles in both atherosclerosis and the clinical implications of CAD. Full article
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