Journal Description
Fishes
Fishes
is an international, peer-reviewed, scientific, open access journal published monthly online by MDPI. It covers fishes and aquatic animals research. The Iberian Society of Ichthyology (SIBIC) and the Brazilian Society of Aquaculture and Aquatic Biology (Aquabio) are affiliated with Fishes and their members receive a discount on the article processing charges.
- Open Access— free for readers, with article processing charges (APC) paid by authors or their institutions.
- High Visibility: indexed within Scopus, SCIE (Web of Science), PubAg, FSTA, and other databases.
- Journal Rank: JCR - Q2 (Marine & Freshwater Biology)
- Rapid Publication: manuscripts are peer-reviewed and a first decision is provided to authors approximately 15.7 days after submission; acceptance to publication is undertaken in 2.8 days (median values for papers published in this journal in the second half of 2023).
- Recognition of Reviewers: reviewers who provide timely, thorough peer-review reports receive vouchers entitling them to a discount on the APC of their next publication in any MDPI journal, in appreciation of the work done.
- Testimonials: See what our editors and authors say about Fishes.
Impact Factor:
2.3 (2022);
5-Year Impact Factor:
2.4 (2022)
Latest Articles
Toxicity, Oxidative Stress, and Tissue Distribution of Butachlor in the Juvenile Chinese Mitten Crab (Eriocheir sinensis)
Fishes 2024, 9(5), 177; https://doi.org/10.3390/fishes9050177 - 13 May 2024
Abstract
The Chinese mitten crab (Eriocheir sinensis) is one of the most commercially important crustacean species in China. The aim of this study was to characterize the toxic effects of butachlor (an herbicide of the acetanilide class) on juvenile E. sinensis crabs.
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The Chinese mitten crab (Eriocheir sinensis) is one of the most commercially important crustacean species in China. The aim of this study was to characterize the toxic effects of butachlor (an herbicide of the acetanilide class) on juvenile E. sinensis crabs. The lethal effects and the acute toxicity of butachlor on juvenile E. sinensis specimens were assessed through a semi-static in vitro experiment. We determined the activities of superoxide dismutase (SOD) and catalase (CAT) as well as the levels of glutathione (GSH) and malondialdehyde (MDA) in the gills and the hepatopancreas of the juvenile crabs, at different time points over a 14-day short-term exposure to butachlor. Moreover, we measured the residual levels of butachlor in three different tissues (gills, hepatopancreas, and muscles) of the juvenile crabs over a longer period. Our findings revealed that butachlor is highly toxic for juvenile E. sinensis crabs. In fact, the median lethal concentration (LC50) values of butachlor at 24, 48, 72, and 96 h were found to be 4.22, 1.84, 0.34, and 0.14 mg/L, respectively, while the safe concentration was 0.014 mg/L. The antioxidant defense ability of the juvenile E. sinensis crabs against butachlor was induced after exposure to the herbicide at a concentration of 0.01 mg/L. After 14 days of exposure to butachlor at 0.04 and 0.16 mg/L, both SOD and CAT were found to be significantly inhibited (p < 0.05), the GSH levels were found to be significantly decreased (p < 0.05) and the MDA levels were identified as significantly increased (p < 0.05). Moreover, after 14 days of exposure to butachlor at 0.16 mg/L, the activities of SOD and CAT as well as the content of GSH in the hepatopancreas were found to be significantly decreased (p < 0.05). Our results revealed that a high concentration of butachlor was capable of inducing oxidative stress and damage in juvenile E. sinensis crabs. The maximal residual value of butachlor was obtained in the gills, with a content of 4.56 μg/kg. Butachlor was not detected after 24 days in the aforementioned three tissues of the juvenile crabs, thereby indicating that it was effectively metabolized.
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(This article belongs to the Special Issue Advances in Crab Fisheries)
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Open AccessEditorial
Effect of Dietary Supplementation on the Growth and Immunity of Fish and Shellfish
by
Changle Qi, Qiyou Xu, Jianhua Ming, Fei Song and Chuanpeng Zhou
Fishes 2024, 9(5), 176; https://doi.org/10.3390/fishes9050176 - 13 May 2024
Abstract
With the rapid development of aquaculture, the shortage of high-quality dietary ingredients has become a critical problem limiting the sustainable development of aquaculture [...]
Full article
(This article belongs to the Special Issue Effect of Dietary Supplementation on the Growth and Immunity of Fish and Shellfish)
Open AccessArticle
Effect of an Ipomoea aquatica Floating Raft on the Water Quality, Antioxidant System, Non-Specific Immune Responses, and Microbial Diversity of Penaeus vannamei in an Aquaculture System
by
Zhuohao Ruan, Ruilin Xie, Yifu Li, Yuanyuan Luo, Zufeng Weng and Wensheng Liu
Fishes 2024, 9(5), 175; https://doi.org/10.3390/fishes9050175 - 12 May 2024
Abstract
Pacific white shrimp (Penaeus vannamei) is one of the main shrimp species cultivated around the world. Despite its high yields and easy handling, water pollution from intensive shrimp cultivation remains a serious problem in China. In this study, a compound aquaculture
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Pacific white shrimp (Penaeus vannamei) is one of the main shrimp species cultivated around the world. Despite its high yields and easy handling, water pollution from intensive shrimp cultivation remains a serious problem in China. In this study, a compound aquaculture model of P. vannamei and water spinach (Ipomoea aquatica) was used to investigate the effect of a water spinach floating raft on water quality, antioxidants, non-specific immune response, growth performance, and microbial diversity. The experimental design of this study consisted of two groups with three replicates for each, i.e., control group: aquatic monoculture (AM) system with only P. vannamei; treatment group: P. vannamei-I. aquatica raft aquaponics (AP) system with a 50% cover ratio with a water spinach floating raft. The experiment lasted for seven weeks. The results show that the concentrations of total phosphorus (TP), total nitrogen (TN), nitrate nitrogen (NO3−-N), ammonia nitrogen (NH4+-N), nitrite nitrogen (NO2−-N), and active phosphorus (AP) in the AM group were higher than those in the AP group at different sampling times. The water quality index of the AP group was better than that of the AM group, indicating that water spinach can remove the nutrients from aquaculture water bodies. The average daily gain and survival rate of shrimp in the AP group were higher than those in the AM group. The total antioxidant capacity (T-AOC), catalase (CAT), superoxide dismutase (SOD), malondialdehyde (MDA), and acid phosphatase (ACP) in the AP group were better than those in the AM group. The Shannon–Wiener and Simpson indices of the gut, water, and sediment of the AP system were significantly higher than those in the AM system, which implied a higher abundance of microorganisms in the AP system. These results demonstrate that the application of a water spinach floating raft in aquaponics can not only improve the water quality, but also improve the growth performance, antioxidant system, and non-specific immune responses of Pacific white shrimp, while increasing the abundance of microorganisms in the aquaculture system and improving the ecological benefits in terms of the expenditure.
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(This article belongs to the Section Sustainable Aquaculture)
Open AccessArticle
Effects of Three Sources of Astaxanthin on the Growth, Coloration, and Antioxidant Capacity of Rainbow Trout (Oncorhynchus mykiss) during Long-Term Feeding
by
Lei Wang, Xiaowen Long, Yaopeng Li, Yong Zhang, Weihong Sun and Xugan Wu
Fishes 2024, 9(5), 174; https://doi.org/10.3390/fishes9050174 - 10 May 2024
Abstract
Astaxanthin is an important pigment for the rainbow trout Oncorhynchus mykiss. This study was conducted to investigate the effects of different sources of dietary astaxanthin on the growth, coloration, and antioxidant capacity of the commercial-sized O. mykiss during long-term feeding. Haematococcus pluvialis
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Astaxanthin is an important pigment for the rainbow trout Oncorhynchus mykiss. This study was conducted to investigate the effects of different sources of dietary astaxanthin on the growth, coloration, and antioxidant capacity of the commercial-sized O. mykiss during long-term feeding. Haematococcus pluvialis (HP), yeast Phaffia rhodozyma (PR), and synthetic astaxanthin (SA) were added to the basic feed (no astaxanthin, NA) to prepare the isonitrogenous and isolipidic experimental diets; the actual astaxanthin content values in the diets were 31.25, 32.96, and 31.50 mg/kg, respectively. Eighteen hundred O. mykiss, averaging 670 ± 20 g, were randomly divided into four groups and then fed with the experimental diet for four months. Dietary supplementation of P. rhodozyma and synthetic astaxanthin had no significant effects on the growth and tissue indexes of O. mykiss. In contrast, dietary supplementation with astaxanthin from H. pluvialis significantly increased the weight gain rate after four months of feeding. The fillet lightness of O. mykiss in the PR and SA was statistically lower than that in the NA and HP; the redness and astaxanthin content of fillet in the HP, PR, and SA groups were statistically higher than those in the NA. The total antioxidant capacity of the liver and serum in the HP was statistically higher than that in other diet groups, and a higher liver total superoxide dismutase activity was detected in the HP compared with the PR. Dietary supplementation of astaxanthin significantly increased the glutathione peroxidase activity in the liver and serum, and the highest serum glutathione peroxidase activity was detected in the HP, while dietary astaxanthin significantly decreased the malondialdehyde content in the liver and serum. Dietary supplementation of PR significantly increased the fillet ash content, while the highest fillet total lipid content was detected in the HP. Dietary astaxanthin significantly improved fillet redness and antioxidant capacity, among which H. pluvialis astaxanthin has greater effects on improving weight gain, antioxidant capacity, and fillet total lipid content.
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(This article belongs to the Section Nutrition and Feeding)
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Open AccessArticle
Coexisting in the Surf Zone: Age and Feeding Habits of the Spotted Seabass (Dicentrarchus punctatus) and European Seabass (Dicentrarchus labrax) on the Gulf of Cádiz Beaches (Southwest Iberian Peninsula)
by
Carlos Rodríguez-García, Ana Toro-Podadera, Jesica Sarmiento-Carbajal and Remedios Cabrera-Castro
Fishes 2024, 9(5), 173; https://doi.org/10.3390/fishes9050173 - 9 May 2024
Abstract
Various commercial fish species utilize different coastal habitats as nurseries in their juvenile stages, with surf zones being particularly crucial due to the protection and abundant food resources they offer. Among the species that rely on these areas are the spotted seabass (
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Various commercial fish species utilize different coastal habitats as nurseries in their juvenile stages, with surf zones being particularly crucial due to the protection and abundant food resources they offer. Among the species that rely on these areas are the spotted seabass (Dicentrarchus punctatus) and the European seabass (Dicentrarchus labrax). This study aimed to investigate the age and feeding habits of surf zone specimens of these species and explore their environmental adaptations. The average size for D. punctatus was 16.94 ± 4.05 cm, and for D. labrax, it was 23.23 ± 6.30 cm. The length–weight relationship for D. punctatus was TW = 0.013*TL2.885 (parameter a: 95% CI: 0.012–0.014; parameter b: 95% CI: 2.854–2.917), and for D. labrax, it was TW = 0.008*TL3.095 (parameter a: 95% CI: 0.006–0.009; parameter b: 95% CI: 3.040–3.151). In both D. punctatus (79.20%) and D. labrax (75.92%), the predominant age classes were 1+ and 2+. Significant variations in age class abundance were observed in D. punctatus based on the time of day, lunar phase, and season, while D. labrax showed variations only by season. A diet analysis revealed that both species primarily consume mysids and fish, with D. punctatus showing dietary variations related to the time of day, lunar phase, and season, and D. labrax showing variations with the time of day and season.
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(This article belongs to the Section Biology and Ecology)
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Open AccessArticle
Cloning, Characterization and Functional Analysis of Caspase 8-like Gene in Apoptosis of Crassostrea hongkongensis Response to Hyper-Salinity Stress
by
Jinji Lin, Ziqi Yu, Yang Leng, Jiexiong Zhu, Feifei Yu, Yishan Lu, Jiayu Chen, Wenhao He, Yixin Zhang and Yaoshen Wen
Fishes 2024, 9(5), 172; https://doi.org/10.3390/fishes9050172 - 9 May 2024
Abstract
Caspase-8, a member of the caspase family, is an initiating caspase and plays a crucial role in apoptosis. In this study, the full-length cDNA of caspase8-like (CASP8-like) was isolated from Crassostrea hongkongensis (C. hongkongensis) by RACE-PCR. ChCASP8-like contained
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Caspase-8, a member of the caspase family, is an initiating caspase and plays a crucial role in apoptosis. In this study, the full-length cDNA of caspase8-like (CASP8-like) was isolated from Crassostrea hongkongensis (C. hongkongensis) by RACE-PCR. ChCASP8-like contained a 1599-bp open reading frame (ORF) encoding 533 amino acids with two conserved death effector domains (DEDs) and a cysteine aspartase cysteine structural domain (CASc). Amino acid sequence comparison showed that ChCASP8-like shared the highest identity (85.4%) with CASP8-like of C. angulata. The tissue expression profile showed that ChCASP8-like was constitutively expressed in gills, hepatopancreas, mantle, adductor muscle, hemocytes and gonads, and was significantly upregulated in hemocytes, hepatopancreas and gills under hyper-salinity stress. The apoptosis-related genes, including ATR, CHK1, BCL-XL, CASP8-like, CASP9 and CASP3, were significantly activated by hyper-salinity stress, but were remarkably inhibited by ChCASP8-like silencing. The caspase 8 activity was increased by 1.7-fold after hyper-salinity stress, and was inhibited by 9.4% by ChCASP8-like silencing. Moreover, ChCASP8-like silencing clearly alleviated the apoptosis resulting from hyper-salinity stress. These results collectively demonstrated that ChCASP8-like played a crucial role in inducing apoptosis against hyper-salinity stress.
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(This article belongs to the Section Aquatic Invertebrates)
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Open AccessArticle
Reducing Artisanal Fishery Impact on Marine Community: New Data from Comparison of Innovative and Traditional Gear
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Manfredi Madia, Massimiliano Bottaro, Tiziana Cillari, Andrea Li Vorsi, Luca Castriota, Maria Rita Amico, Sergio Bizzarri, Teresa Maggio, Manuela Falautano, Michele Gristina, Ilaria Di Lauro, Floriana Trova, Patrizia Perzia, Roberto D’Ambra, Enrico Casola and Mauro Sinopoli
Fishes 2024, 9(5), 171; https://doi.org/10.3390/fishes9050171 - 8 May 2024
Abstract
Fishery resources overexploitation, together with bycatch and discards, have an impact on marine ecosystems. The adoption of technologically innovative gears is a possible solution to reduce the discard and to enhance the sustainability of fishery, mainly in artisanal fisheries that represent about 80%
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Fishery resources overexploitation, together with bycatch and discards, have an impact on marine ecosystems. The adoption of technologically innovative gears is a possible solution to reduce the discard and to enhance the sustainability of fishery, mainly in artisanal fisheries that represent about 80% of the EU Mediterranean fleet. In the perspective of fishery sustainability, it is necessary to study and test alternative gears to the traditional ones, also with collaboration of fishers. In the present study, results of experimental fishing activities carried out in two Mediterranean areas with traditional and innovative gears of small-scale fishing are reported. Thirty-four hauls were carried out to compare the catch of two types of trammel nets: a traditional one and experimental guarding net. Additionally, 12 hauls were carried out to compare collapsible pots and traditional pots. No significant differences were recorded between trammel nets in terms of commercial catch and discard. However, interesting differences in discard composition were recorded, with higher Elasmobranchs presence in trammel nets, including species assessed as critically endangered and vulnerable. The use of trapula pots in place of traditional ones showed a lower discard of specific resources and an advantage for fishers in terms of space occupied on board.
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(This article belongs to the Section Fishery Facilities, Equipment, and Information Technology)
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Open AccessArticle
Effects of RNA Interference with Acetyl-CoA Carboxylase Gene on Expression of Fatty Acid Metabolism-Related Genes in Macrobrachium rosenbergii under Cold Stress
by
Hua Zhong, Xinyi Yao, Haihui Tu, Zhenglong Xia, Miaoying Cai, Qiang Sheng, Shaokui Yi, Guoliang Yang and Qiongying Tang
Fishes 2024, 9(5), 170; https://doi.org/10.3390/fishes9050170 - 8 May 2024
Abstract
Macrobrachium rosenbergii is a warm water species, and low temperature is a limiting factor for its growth and survival. In order to explore the role of the acetyl-CoA-carboxylase (ACC) gene in response to the cold stress of M. rosenbergii, we
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Macrobrachium rosenbergii is a warm water species, and low temperature is a limiting factor for its growth and survival. In order to explore the role of the acetyl-CoA-carboxylase (ACC) gene in response to the cold stress of M. rosenbergii, we investigated the effects of RNA interference (RNAi) with the ACC gene on the expression of fatty acid metabolism-related genes and the mortality of M. rosenbergii under cold stress. The results showed that different siRNA sequences and different injection concentrations had different inhibiting effects on ACC gene expression, and siRNA-III with an injection concentration of 2.0 μg/g (siRNA/prawn body weight) had the best interference effect. With the optimal siRNA and the optimal concentration under cold stress, the expressions of three fatty acid metabolism-related genes, FabD, echA, and ACOT, were generally significantly down-regulated. Compared to negative (scrambled-siRNA) and blank (PBS) control groups, the expression of FabD in the interference group was extremely significantly down-regulated at 12 h in the hepatopancreas and at 18 h in the muscles and gills; EchA was highly significantly down-regulated at 6 and 12 h in the muscles and gills; and ACOT was extremely significantly down-regulated and kept declining in the gills. Within 6–18 h after injection under cold stress, the mortality rate of the siRNA interference group (75%) was much lower than that of the negative (95%) or blank control group (97.5%), and all prawns died after 24 h. In conclusion, RNA interference with the ACC gene inhibited the expression of some fatty acid metabolism-related genes, and could partly improve the tolerance of M. rosenbergii to cold stress, indicating that the ACC gene might play an important role in the response of M. rosenbergii to cold stress.
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(This article belongs to the Special Issue Advances in Shrimp Aquaculture)
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Open AccessArticle
Development and Characterization of Fifteen Polymorphic Microsatellite Loci for Rare and Endangered Species within Luciobarbus Heckel, 1843 Genus in the Aral Basin and Their Conservation Application
by
Kamila Adyrbekova, Silvia Perea and Ignacio Doadrio
Fishes 2024, 9(5), 169; https://doi.org/10.3390/fishes9050169 - 7 May 2024
Abstract
Biodiversity conservation entails not only the preservation of specific taxa but also genetic diversity. Despite the crucial role of molecular data in freshwater fish conservation management, there is a scarcity of information regarding the genetic diversity of Luciobarbus Heckel, 1843 (Actinopterygii, Cyprinidae) populations
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Biodiversity conservation entails not only the preservation of specific taxa but also genetic diversity. Despite the crucial role of molecular data in freshwater fish conservation management, there is a scarcity of information regarding the genetic diversity of Luciobarbus Heckel, 1843 (Actinopterygii, Cyprinidae) populations in the Aral system. Therefore, the primary aim of this study was to provide genetic information on two native species of the Luciobarbus genus found in the Aral system: L. conocephalus (Kessler, 1872) and L. brachycephalus (Kessler, 1872). These species, like many others in the Aral system, confront the imminent threat of extinction due to system alterations. However, genetic studies on these species at the nuclear level are challenging because Luciobarbus is an allotetraploid genus. Consequently, genetic investigations thus far have focused mainly on sequencing mitochondrial genes due to their haploid nature. This study has successfully developed fifteen new polymorphic microsatellite loci, which can prove to be valuable for population genetics, conservation, and other pertinent research on these species.
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(This article belongs to the Section Taxonomy, Evolution, and Biogeography)
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Open AccessArticle
Effect of Toxicity of Chromium (VI) Stressors Alone and Combined to High Temperature on the Histopathological, Antioxidation, Immunity, and Energy Metabolism in Fish Phoxinus lagowskii
by
Tingting Hu, Cunrun Ye, Zhaoyang Ning, Tianmei Liu and Weijie Mu
Fishes 2024, 9(5), 168; https://doi.org/10.3390/fishes9050168 - 5 May 2024
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Fish in aquatic ecosystems are often impacted by environmental stressors like temperature fluctuations and exposure to heavy metals. Chromium (Cr6+) is a known environmental pollutant that poses a threat to aquatic life. Various environmental factors, such as water temperature, have been
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Fish in aquatic ecosystems are often impacted by environmental stressors like temperature fluctuations and exposure to heavy metals. Chromium (Cr6+) is a known environmental pollutant that poses a threat to aquatic life. Various environmental factors, such as water temperature, have been found to affect the toxicity of dissolved chemicals in aquatic ecosystems. We investigated the toxicity of combinations of different concentrations of hexavalent chromium (Cr6+) with high temperatures in fish. Hematological indices demonstrated changes in white blood cells (WBCs), hematocrit (HCT), red blood cells (RBCs), and hemoglobin (Hb) levels during the exposure. The qualitative and semi-quantitative analyses of different tissues confirmed that higher concentrations of Cr6+ caused more significant damage than lower concentrations, with evident alterations observed in circulatory and regressive aspects. Furthermore, brain acetylcholinesterase levels decreased in both single heavy metal exposure and combined exposure at a high temperature. The activity of antioxidant oxidase and immunological parameters increased in all treatment groups compared with the control group following long-term exposure. A significant and increased effect of Cr6+ in the high-temperature groups was observed on the evaluated biomarkers, suggesting a possible synergistic effect between Cr6+ and increased temperature. The integrated biomarker response (IBR) reported the highest level of stress at 10 mg/L Cr6+ combined with high temperature. The IBR analysis revealed that the highest activity of response enzymes, such as acid phosphatase (ACP), superoxide dismutase (SOD), and glutathione S-transferases (GST), was observed in the liver, whereas the gills displayed alkaline phosphatase (ALP), GST, and SOD activity, and the kidneys demonstrated SOD, ACP, and aspartate aminotransferase (AST) to be most active. Through histopathology, antioxidant enzymes, and metabolism- and immunity-related enzymes, we determined that high temperatures enhance the potential toxicity of Cr6+ in fish. We recommend conducting a thorough assessment of the impact of climate change, particularly temperature fluctuations, when studying the toxic effects of metal pollution, like chromium, in aquatic ecosystems.
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Open AccessReview
The Role of Functional Feed Additives in Enhancing Aquaculture Sustainability
by
Abigail John Onomu and Grace Emily Okuthe
Fishes 2024, 9(5), 167; https://doi.org/10.3390/fishes9050167 - 5 May 2024
Abstract
Aquaculture serves as a source of protein and livelihood and is an alternative to capture fisheries, thereby reducing pressure on the wild. However, aquaculture tends to be limited by sustainability issues, which include overdependency on fishmeal, the high cost associated with fishmeal, the
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Aquaculture serves as a source of protein and livelihood and is an alternative to capture fisheries, thereby reducing pressure on the wild. However, aquaculture tends to be limited by sustainability issues, which include overdependency on fishmeal, the high cost associated with fishmeal, the environmental impact of aquaculture activities, which may be detrimental to aquatic lives and the environment, and the use of antibiotics to treat diseases, which may have an adverse effect in their host or the environment. Efforts are being made toward attaining practical ways to enhance aquaculture sustainability. One such effort is using functional feed additives in feed formulation. Functional feed additives are dietary ingredients incorporated in feed formulations, not only for the usual provision of basic nutritional requirements as offered by traditional feed but also for growth and health enhancement; environmental and economic gain. This review emphasizes the importance of incorporating functional feed additives such as probiotics, prebiotics, symbiotics, and phytogenics. This study evaluates and presents holistic information on functional additives, their roles in enhancing aquaculture sustainability, and the challenges encountered in their application.
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(This article belongs to the Special Issue Feed Additives in Aquaculture)
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Open AccessArticle
Assessing the Conservation Value of Artificial and Natural Reefs via Ichthyoplankton Spatio-Temporal Dynamics
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Carlos Adrián Sánchez-Caballero, José Manuel Borges-Souza, Ricardo Javier Saldierna-Martínez and Avigdor Abelson
Fishes 2024, 9(5), 166; https://doi.org/10.3390/fishes9050166 - 4 May 2024
Abstract
The distribution of fish eggs and larvae (ichthyoplankton) reflects spawning and nursery areas as well as dispersal routes. This study’s goal is to demonstrate how the identification of ichthyoplankton species and stages and their spatial distribution among natural reefs (NRs) and artificial reefs
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The distribution of fish eggs and larvae (ichthyoplankton) reflects spawning and nursery areas as well as dispersal routes. This study’s goal is to demonstrate how the identification of ichthyoplankton species and stages and their spatial distribution among natural reefs (NRs) and artificial reefs (ARs) may serve as decision-making tools in conservation and fishery management. Natural reefs exhibited an eight-times higher abundance of eggs, as well as the highest abundance of larvae in the yolk-sac and preflexion phases. In contrast, ARs had the highest abundance of larvae in the flexion and postflexion phases. Natural reefs may serve as breeding grounds for Scaridae, Labridae, and Mugilidae; whereas, ARs may serve as breeding sites for Lutjanidae, Synodontidae, Carangidae, Fistularidae, and Haemulidae. Our study revealed differences between ARs and NRs, which demonstrate the potential of artificial reefs to expand the supply and settlement options of reef fishes and consequently can lead to increased fish production with potential benefits to adjacent fishing areas through connectivity. Thus, ARs as no-take sites can be effective tools for both fishery management and biodiversity conservation. The findings highlight the potential use of ichthyoplankton tools and the importance of considering both types of reefs in marine conservation and management efforts.
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(This article belongs to the Special Issue Biology and Ecology of Coral Reef Fishes)
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Open AccessArticle
Circularity Assessment in Aquaculture: The Case of Integrated Multi-Trophic Aquaculture (IMTA) Systems
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Daniel Checa, Brett M. Macey, John J. Bolton, Marissa Brink-Hull, Pauline O’Donohoe, Alessandro Cardozo, Luis Henrique Poersch and Inmaculada Sánchez
Fishes 2024, 9(5), 165; https://doi.org/10.3390/fishes9050165 - 4 May 2024
Abstract
Aquaculture is a strategic sector that aims to meet the increased demands for healthy food for current and future populations. However, this progression needs to be sustainable, which can potentially be achieved by the implementation of circular practices. Integrated multi-trophic aquaculture (IMTA) systems
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Aquaculture is a strategic sector that aims to meet the increased demands for healthy food for current and future populations. However, this progression needs to be sustainable, which can potentially be achieved by the implementation of circular practices. Integrated multi-trophic aquaculture (IMTA) systems promote the incorporation of circular principles. Nevertheless, the lack of harmonized definitions and standards impedes the quantification of these circular attributes. This study aims to explore the potential principles embedded in IMTA and the existing alternatives to quantify circularity. Two basic pillars (nutrient management and resource use efficiency) were identified as the most relevant circularity attributes for IMTA systems and were quantified through aquaculture-specific indicators. Bioremediation indicators, together with the efficiency indicators in terms of feed, water, energy, and infrastructure materials used, were selected to evaluate the circularity performance of four IMTA trials in three aquaculture facilities in Ireland, Brazil, and South Africa. Salmon, white shrimp, tilapia, abalone, and sea urchins were studied and cultivated together in various combinations with several low-trophic species in these IMTA trials to evaluate the improvement in circularity compared with corresponding monoculture conditions. The results showed an increase in circularity of up to 90% in terms of water recirculation, as well as bioremediation, which was improved by 80%–90%, providing evidence for the potential role of IMTA in the circularity transition.
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(This article belongs to the Special Issue Integrated Aquaculture and Monoculture of Low-Trophic Species)
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Open AccessArticle
Genetic Basis for Morphological Variation in the Zebrafish Danio rerio: Insights from a Low-Heterozygosity Line
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Gil Martinez-Bautista, Pamela Padilla and Warren W. Burggren
Fishes 2024, 9(5), 164; https://doi.org/10.3390/fishes9050164 - 2 May 2024
Abstract
Data variability complicates reproducibility and the interpretation of experimental results. Different animal models have been employed to decrease variability to enhance experimental power. However, variation frequently persists among and within strains/lines. In zebrafish (Danio rerio), inbred lines (e.g., NHGRI-1) derived from
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Data variability complicates reproducibility and the interpretation of experimental results. Different animal models have been employed to decrease variability to enhance experimental power. However, variation frequently persists among and within strains/lines. In zebrafish (Danio rerio), inbred lines (e.g., NHGRI-1) derived from wild-type lines have been produced to greatly decrease genetic variation, with the goal of providing better understanding of genetic backgrounds that may influence the experimental outcome of studies employing such lines. We hypothesized that variations in morphological phenotypes shaped by environmental stressors early in development are correlated with the intrinsic degree of genetic variability of zebrafish lines. We compared morphological variability (yolk–chorion ratio, body mass, embryo mass, total length, condition factor, and specific growth rate) in wild-type AB and NHGRI-1 zebrafish lines as a function of their responses to altered temperature and oxygen availability during the first 7 days post-fertilization. Overall, both lines showed similar developmental trajectories for yolk–chorion ratio, embryo mass, and total length. Additionally, condition factor and specific growth rate showed similar responses within each line, regardless of temperature and hypoxia. Importantly, the coefficient of variation for each variable was significantly lower in NHGRI-1 than AB larvae for 151 of 187 assessed morphological endpoints. Thus, the low-heterozygosity NHGRI-1 zebrafish line can be useful for decreasing inter-individual variation in morphological responses to environmental stressors, thereby aiding in the interpretation of results and enhancing experimental reproducibility.
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(This article belongs to the Section Genetics and Biotechnology)
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Open AccessReview
Supposed Virulence Factors of Flavobacterium psychrophilum: A Review
by
Věra Vaibarová and Alois Čížek
Fishes 2024, 9(5), 163; https://doi.org/10.3390/fishes9050163 - 30 Apr 2024
Abstract
Flavobacterium psychrophilum is currently one of the most important pathogens in aquaculture worldwide, causing high losses to farmed salmonids particularly during early growth stages with significant economic impact. Despite previous attempts, no effective vaccine has been developed, and protection against introduction into farms
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Flavobacterium psychrophilum is currently one of the most important pathogens in aquaculture worldwide, causing high losses to farmed salmonids particularly during early growth stages with significant economic impact. Despite previous attempts, no effective vaccine has been developed, and protection against introduction into farms is difficult due to the ubiquitous occurrence of the pathogen. A better understanding of the mechanism of disease development is essential for targeted therapeutic and preventive measures in farms. Unfortunately, the pathogenesis of diseases caused by F. psychrophilum has not been elucidated yet. Previously, several putative virulence factors have been identified. Some appear to be essential for disease development, while others are probably dispensable. The importance of some factors has not yet been explored. This review focuses on the supposed virulence factors of F. psychrophilum and the current knowledge about their importance in the pathogenesis of the disease.
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(This article belongs to the Special Issue Fish Pathogens: Infection and Biological Control)
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Queen Triggerfish Balistes vetula Age-Based Population Demographics and Reproductive Biology for Waters of the North Caribbean
by
Jesús M. Rivera Hernández and Virginia R. Shervette
Fishes 2024, 9(5), 162; https://doi.org/10.3390/fishes9050162 - 29 Apr 2024
Abstract
Queen triggerfish Balistes vetula is an important reef-associated species for commercial fisheries in the U.S. Caribbean. It exhibits a relatively unique reproductive strategy as a nesting benthic spawner, investing substantial energy in territorial defense, building and maintaining nests, and caring for fertilized eggs
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Queen triggerfish Balistes vetula is an important reef-associated species for commercial fisheries in the U.S. Caribbean. It exhibits a relatively unique reproductive strategy as a nesting benthic spawner, investing substantial energy in territorial defense, building and maintaining nests, and caring for fertilized eggs during the reproductive season. Prior to this study, no comprehensive life history information existed in the literature for queen triggerfish. This study provides the first comprehensive documentation of age, growth, size/age at sexual maturity, reproductive seasonality, and reproductive output for a Balistes species in the Caribbean. From 2013 to 2023, we collected 2190 fish samples from fisheries-dependent and -independent sources from the waters of Puerto Rico and the U.S. Virgin Islands. Fish ranged from 67 to 477 mm fork length (FL). We documented that queen triggerfish is sexually dimorphic with males attaining larger mean sizes-at-age compared to females and the species is characterized by a moderately young age at median sexual maturity (A50 = 3.3 y). The maximum age for our U.S. Caribbean samples was 23 y based on increment counts from otoliths. Spawning season encompassed the months of December to August in the region, and female spawning frequency ranged from an estimated 2 to 84 times per year; female spawning frequency increased with increasing size and age of fish. We documented that commercial fishers in the U.S. Caribbean mainly target “plate-size” individuals, defined in our study as 235–405 mm FL, which appears to act as a self-imposed slot size range limit and results in the fishery not removing individuals in the smallest and largest size groups at high rates. The percentage of immature fish from fisheries-dependent sources was close to 0 (0.8%). Commercial fishing for queen triggerfish in the region currently appears to be sustainable, but monitoring of the population should continue.
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(This article belongs to the Section Biology and Ecology)
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Does the Artificial Enhancement and Release Activity Affect the Genetic Diversity of Marbled Rockfish Sebastiscus marmoratus in Zhoushan Waters?
by
Senping Jiang, Xinyi Chen, Pengfei Li, Haoxue Wang, Jiji Li, Kaida Xu and Yingying Ye
Fishes 2024, 9(5), 161; https://doi.org/10.3390/fishes9050161 - 28 Apr 2024
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Artificial enhancement and release activity is an important method in the restoration of fishery resources. In order to understand the possible genetic effect of hatchery-released populations on wild populations during the artificial enhancement and release activities of Sebastiscus marmoratus in Zhoushan waters, we
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Artificial enhancement and release activity is an important method in the restoration of fishery resources. In order to understand the possible genetic effect of hatchery-released populations on wild populations during the artificial enhancement and release activities of Sebastiscus marmoratus in Zhoushan waters, we utilized mitochondrial DNA control region sequences to examine the genetic diversity in four S. marmoratus populations, including one farmed population, one released population and two wild populations. A total of 68 haplotypes from 123 individuals were detected, including 3 shared haplotypes. Haplotype diversity ranged from 0.944 to 0.980, with a mean of 0.966. The nucleotide diversity ranged from 0.020 to 0.025, with a mean of 0.022. Analysis of Molecular Variance (AMOVA) indicated that the primary genetic variation occurs within populations and the index of genetic differentiation between populations (FST) among the four populations showed no differentiation. The results indicate that the current artificial enhancement and release has not impacted the S. marmoratus population in Zhoushan waters. Continued long-term monitoring is essential to protect the high-quality germplasm resources of S. marmoratus.
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Adriatic Sea Fishery Product Safety and Prospectives in Relation to Climate Change
by
Edmond Hala and Rigers Bakiu
Fishes 2024, 9(5), 160; https://doi.org/10.3390/fishes9050160 - 28 Apr 2024
Abstract
This bibliographic study addresses key aspects related to fishing, product safety, and climate change in the Adriatic Sea region. The examination of product safety focuses on the assessment of contaminants originating from human activities such as industry, mining, agriculture, and household waste disposal.
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This bibliographic study addresses key aspects related to fishing, product safety, and climate change in the Adriatic Sea region. The examination of product safety focuses on the assessment of contaminants originating from human activities such as industry, mining, agriculture, and household waste disposal. The contamination of the aquatic environment has emerged as a pressing global concern, extending to the Adriatic basin. Aquatic organisms, including fish, are prone to accumulating pollutants directly from polluted water sources and indirectly through the food web. The bio-accumulation of potentially hazardous substances, particularly heavy metals, pesticides, PCBs, PAHs, and antibiotic resistance in aquatic organisms, poses a significant threat to human health. Climate change effects will deplete our seafood supply in terms of quantity and safety owing to negative consequences such as higher levels of pollution, parasites, viruses, infections, acidification, and toxicities such as shellfish poisoning. Global food safety strategies should be developed to reduce greenhouse gas emissions and promote environmentally friendly technology, which indirectly affects seafood quality and microbiological safety, especially for the Adriatic Sea, which is part of the Mediterranean Sea, characterized by the most polluted waters in the world.
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(This article belongs to the Section Processing and Comprehensive Utilization of Fishery Products)
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Mechanistic Insights into Nonylphenol Stress on BMP2 and BMP4 Gene Expression in Red Crucian Carp (Carassius auratus Red var.)
by
Die Li, Xiaojuan Cui, Shuailin Chen, Jia Xu, Yujing Li, Qiongyu Zhang and Yuandong Sun
Fishes 2024, 9(5), 159; https://doi.org/10.3390/fishes9050159 - 28 Apr 2024
Abstract
Nonylphenol (NP) is a known endocrine-disrupting chemical (EDC) that has been shown to affect bone development in mammals. However, the detrimental impacts of NP on the skeletal growth and development of aquatic species, especially bony fish, remain poorly understood. Bone morphogenic proteins (BMPs),
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Nonylphenol (NP) is a known endocrine-disrupting chemical (EDC) that has been shown to affect bone development in mammals. However, the detrimental impacts of NP on the skeletal growth and development of aquatic species, especially bony fish, remain poorly understood. Bone morphogenic proteins (BMPs), essential for bone formation and osteoblast differentiation, act through the BMP-Smad signaling pathway. In this study, two BMP genes, BMP2 and BMP4, were cloned and characterized in the red crucian carp (Carassius auratus red var.). The full-length cDNAs of BMP2 and BMP4 were 2029 bp and 2095 bp, respectively, encoding polypeptides of 411 and 433 amino acids, and share a typical TGF-β domain with other BMPs. The tissue expression patterns of both genes were identified, showing ubiquitous expression across all studied tissues. Additionally, the exposure of embryos or adult fish to NP stress resulted in a downregulation of BMP2, BMP4, and other genes associated with the BMP-Smad signaling pathway. Moreover, the combined treatment of adult fish with NP and the specific BMP receptor inhibitor significantly reduced these genes’ expression. These findings elucidate the mechanism of NP stress on BMP2 and BMP4, suggesting a role for the BMP-Smad signaling pathway in the response to endocrine-disrupting chemicals in fish.
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(This article belongs to the Special Issue Genetics and Breeding in Aquaculture)
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TMT-Based Quantitative Proteomics Reveal the Metabolic Changes Underlying Growth Superiority in a Novel Gymnocypris Hybrid, Gymnocypris przewalskii ♀ × G. eckloni ♂
by
Yanzhen Dong, Junming Zhou, Dayong Xu, Yun Zhao and Dongming Qi
Fishes 2024, 9(5), 158; https://doi.org/10.3390/fishes9050158 - 28 Apr 2024
Abstract
Hybrid breeding is an effective approach to generate better varieties and prevent variety degradation. The present study investigated the metabolic changes underlying growth superiority in the novel Gymnocypris hybrid (GH), Gymnocypris przewalskii ♀ (GP) × G. eckloni ♂ (GE). The ranking of survival
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Hybrid breeding is an effective approach to generate better varieties and prevent variety degradation. The present study investigated the metabolic changes underlying growth superiority in the novel Gymnocypris hybrid (GH), Gymnocypris przewalskii ♀ (GP) × G. eckloni ♂ (GE). The ranking of survival rate was GH > GE > GP, whereas the ranking of growth rate was GE > GH > GP. A proteomic analysis of G. hybrid and its parents was conducted to elucidate the metabolic changes underlying growth superiority. Identified pathways were primarily associated with amino acid, carbohydrate, energy, lipid, and nucleotide metabolism. These metabolic pathways, which are closely associated with growth, are controlled through regulation of the expression of numerous proteins, including adenosylhomocysteinase, hydroxypyruvate reductase, glutamate-cysteine ligase, L-lactate dehydrogenase, creatine kinase, GDP-L-fucose synthase, pyruvate kinase, fructose-bisphosphate aldolase, carbonic anhydrase, phosphopyruvate hydratase, phosphoglycerate kinase, S-(hydroxymethyl) glutathione dehydrogenase, and AMP deaminase. Real-time PCR assays showed that the level of mRNA expression of differentially expressed genes was positively correlated with growth. Proteins that were differentially expressed in GH exhibited fewer differences from GP and more differences from GE. These data are the first to reveal the molecular mechanism whereby growth is regulated in G. hybrid and its parents at the protein level. The study thus provides important information for genetic breeding and improvement of G. hybrid for aquaculture production.
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(This article belongs to the Section Genetics and Biotechnology)
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